Bioinformatic projects accomplishments

• Nine ampliseq projects Bioinformatics analysis: QC, DADA2/QIIME2, downstream diversity, composition, taxonomy, functional analysis in R
  1. ITS: Leaf inhabiting fungal endophytes of European Aspen tree
  2. ITS: Leaf inhabiting fungal endophytes of European Beech tree
  3. ITS: Leaf inhabiting fungal endophytes of Rye seeds and soils
  4. 18S: Sequencing of Arbuscular Mycorrhizal (AMF) Communities in Environmental Samples
  5. COI: Wildflower inhabiting terrestrial arthropods
  6. ITS: Metagenomics of seeds (empty vs filled)
  7. 16S: Leaf inhabiting fungal endophytes of Rye seeds and soils
  8. 16S: Water samples of different rivers of Bangladesh
  9. 16S: Human Gut microbiome
• Three metagenomics projects Bioinformatics analysis: QC, Taxonomy, Assembly, Binning, functional and downstream data analysis in R
  1. Airfilter data
  2. Leaf litter data (Alder)
  3. Human gut microbiome
• Ten Bulk RNASeq projects: Bioinformatics and downstream DGE, GO, KO analysis in R
  1. Sugarbeet (PhD project 1)
  2. Sugarbeet (PhD project 2)
  3. Potato (PostDoc project 1)
  4. Potato (PostDoc project 2)
  5. Potato (Researcher project 1)
  6. Brassica oleracea (PostDoc project 3)
  7. Brassica oleracea (PostDoc project 4)
  8. Red clover (Researcher project 2)
  9. Red clover (Researcher project 3)
  10. QTLSeq (PhD project 3)
  11. Meta transcriptome Bioreactor (PhD project 4)

Research Interests

• Environmental Metagenomics and Molecular Ecology

  Environmental monitoring (Disease and pest by Airborne eDNA), bryophyte phenology, metabarcoding, biodiversity, disease resistance

• Transcriptomics

  Gene expression, transcriptome, DGE, GO KO analysis, Functional analysis; Metatranscriptomics, AI-driven analysis (ML & DL)

Education

• Ph.D., Molecular Ecology (12/2013 – 09/2017)

  Greifswald University, Germany

• M.S., Ecology (08/2010 – 05/2013)

  Umeå University, Umeå, Sweden

• M.S., Plant Pathology (03/2008 – 07/2010)

  Sher-e-Bangla Agricultural University, Dhaka, Bangladesh

• B.Sc.Ag(Hons), Agricultural Science (01/2004 – 03/2008)

  Sher-e-Bangla Agricultural University, Dhaka, Bangladesh

Research projects

• TanAsp (mycobiome and metabolites in European Aspen)
• Sweden Biodiversity in Time and Space (SweBITS) through meta-genomics
• Mycoviruses
• Leaf-inhabiting endophytes of European beech trees
• Plant-fungi-insect interaction in Swedish Aspen

Research Experience

• Bioinformatician (Bioinformatiker), SLUBI (06/2024 – Continue)

  Department of Plant Biology, SLU - Swedish University of Agricultural Sciences, Uppsala, Sweden
  Research topics: Metagenomics (ITS, 16S, COI, 18S, eDNA: Short reads), SLUBI

• Research Engineer (Forskningsingenjör), 2022-02-15 to 2024-05-31

  Department of Plant Biology, SLU, Uppsala, Sweden
  Research topics: airborne eDNA, bryophyte phenology, multi-omics integration

• Senior Research Engineer (Senior forskningsingenjör), 2022-01-06 to 2022-02-15

  Department of Ecology and Environmental Sciences, Umeå University, Sweden
  Research topics: environmental metagenomics, airborne eDNA, bryophyte phenology, data integration

• Post-doc Research Fellow (Forskare), from 2020-01-06

  Department of Ecology and Environmental Sciences, Umeå University, Sweden
  Research topics: airborne eDNA, bryophyte phenology, multi-omics integration, phenology

• Post-doc Research Fellow (Forskare), 2018-07-09 to 2019-10-31

  Department of Virology, Institute Of Plant Molecular Biology, Biology Centre CAS, Ceske Budejovice, Czech Republic
  Research topics: Fungal virology, molecular biology

• PhD Student (Doktorand), 2013-12-01 to 2017-05-31

  Institute of Botany and Landscape Ecology, Ernst-Moritz-Arndt Universität (Greifswald University), Greifswald, Germany
  Research topics: Leaf inhabiting endophytic fungi, ITS metabarcoding

• Research Assistant (Forskningsassistent), 2012-07-01 to 2012-09-30

  Department of Plant Physiology, UPSC, Umeå University, Sweden
  Research topics: fungal endophytes, molecular ecology

Note: Family leave for approximately nine months after PhD studies (2017–2018).